PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0042s0269.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 917aa    MW: 100234 Da    PI: 6.6537
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0042s0269.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.6e-18311410198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ grlv+pkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G  ++ ++ +L +gD v+F++ +
  Kaladp0042s0269.2.p 311 FEKTLSASDAGRIGRLVVPKKCAEAYfpHISQPEGLPLKVQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTSYIQSMQLLAGDKVTFSRLE 399
                          99**************************556667778***************9989999999***9.********************766 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv+++++
  Kaladp0042s0269.2.p 400 -PEGKLVMGFRK 410
                          .77777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-29304412IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-20308410IPR015300DNA-binding pseudobarrel domain
CDDcd100174.38E-22309410No hitNo description
PfamPF023621.5E-15311410IPR003340B3 DNA binding domain
SMARTSM010197.6E-21311412IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251311412IPR003340B3 DNA binding domain
PROSITE profilePS5105014.149532582IPR011124Zinc finger, CW-type
PfamPF074968.7E-12537579IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MAGGSAPASI PACVIVAPLF TRRGDFVKFS THKLQAGYLV SHAIRWLTKN SPLQHIHCGC  60
IASVQNFTLL DAGGVECITC AKRSGRHVLP GNLAYPPPSH GVYKTPFSER IRDLSTKSWS  120
QFSGVGPMQW REAPNLYNSL LAQSEAHTRG PCDGGVSNGL NRYYSNEVFP LGSLEKQSRR  180
EIDWSMRRIA RTSEIHENGN SGVLMEMLSA KENSSALRLE PLLKTSSANE SNCEMTASGS  240
LLRAAPLSQP PKSFHSNHSS EFDPCSETPV QNGRSRGDGR NKNQLLTRYL PRTTDEELQK  300
IAGSSEIKPL FEKTLSASDA GRIGRLVVPK KCAEAYFPHI SQPEGLPLKV QDVKGKEWVF  360
QFRFWPNNNS RMYVLEGVTS YIQSMQLLAG DKVTFSRLEP EGKLVMGFRK ASNGSTDLDD  420
EPNKISNNGD ASARINFNLS RADKSGYIAK DIMNVKSSVS RKRKSSTFSS NRHLLFESMD  480
VCELKITLEE AQRLIRPSPN HLSHVGIVEN EIEEFEDCPV IGKPTIFTTD QMGESIQWAQ  540
CEDCLKWRRL PADALLPAKW ICSKNKWDLA RSTCSSPQDI SDEQLDNLLF PKNQSVSKKM  600
RAANQELETV EGLEGLDALA NLAILGEGQA IASSGHITTK HPRHKMGCSC IVCIQPPSGK  660
GLKHKQTCDC TVCLTVKRRF QTLMLRREKK QQEKDAEAAS EKHQGCSLLI EKSPENDPLT  720
QEDSSAATPT LKEVTDEGSV DISFGKESSA STLKGQIDLN IKPERDDPLI SSELDTLMFS  780
YNTAEAVDQM QSSIHCASAE IVRDPTQTVE VVDGTGSASV TNQLVAAPPA DAHPEKESSP  840
TVKVEETIVN STGTTSVTNQ LVAAPPADAH PEKESSPAVK VVEAIIDGTD TARITNQLAA  900
ARPDEESTPT VTTTSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-1531041913123DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1459464SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467888.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G41e-164Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067G7Y80.0A0A067G7Y8_CITSI; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-139HSI2-like 1